Information for 4-ATGCTAATTA (Motif 4)

T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A
Reverse Opposite:
G A C T T C G A G T C A C G A T A G C T C G T A T A C G T A G C G T C A A G C T
p-value:1e-23
log p-value:-5.355e+01
Information Content per bp:1.658
Number of Target Sequences with motif110.0
Percentage of Target Sequences with motif13.80%
Number of Background Sequences with motif2202.9
Percentage of Background Sequences with motif4.63%
Average Position of motif in Targets47.9 +/- 24.7bp
Average Position of motif in Background50.4 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAATTA-
TATGCWAATBAV
 A C G T T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F2/MA0787.1/Jaspar

Match Rank:2
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--ATGCTAATTA
TTATGCAAATTA
 A C G T A C G T T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-ATGCTAATTA-
WATGCAAATGAG
 A C G T T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:4
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:ATGCTAATTA
--NCTAATTA
 T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A
A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

POU3F3/MA0788.1/Jaspar

Match Rank:5
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---ATGCTAATTA
ATTATGCTAATTT
 A C G T A C G T A C G T T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T

POU1F1/MA0784.1/Jaspar

Match Rank:6
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---ATGCTAATTA-
AATATGCAAATTAG
 A C G T A C G T A C G T T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A A C G T
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G

LHX2/MA0700.1/Jaspar

Match Rank:7
Score:0.84
Offset:2
Orientation:forward strand
Alignment:ATGCTAATTA--
--ACTAATTAAC
 T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A A C G T A C G T
A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

EMX2/MA0886.1/Jaspar

Match Rank:8
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:ATGCTAATTA--
--NCTAATTANN
 T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A A C G T A C G T
A C G T A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

VSX2/MA0726.1/Jaspar

Match Rank:9
Score:0.84
Offset:3
Orientation:forward strand
Alignment:ATGCTAATTA-
---CTAATTAG
 T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A A C G T
A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--ATGCTAATTA
TTATGCAAATTA
 A C G T A C G T T C G A C A G T A T C G A T G C G C A T T C G A C G T A C A G T A G C T C T G A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A