Information for 3-NKDGGCCTTTGTTYYY (Motif 3)

C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
Reverse Opposite:
C T G A T C A G T C G A T G C A C G T A T G A C C T G A T C G A C T G A T C A G T C A G T A G C G T A C G T C A G T A C G A C T
p-value:1e-28
log p-value:-6.549e+01
Information Content per bp:1.484
Number of Target Sequences with motif179.0
Percentage of Target Sequences with motif22.46%
Number of Background Sequences with motif4365.2
Percentage of Background Sequences with motif9.17%
Average Position of motif in Targets52.3 +/- 24.7bp
Average Position of motif in Background49.8 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3/MA0514.1/Jaspar

Match Rank:1
Score:0.89
Offset:5
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
-----CCTTTGTTTT-
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:NKDGGCCTTTGTTYYY--
-TNNTCCTTTGTTCTNNT
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:NKDGGCCTTTGTTYYY--
-NNNTCCTTTGTTCTNNN
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.84
Offset:5
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
-----YCTTTGTTCC-
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.82
Offset:5
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
-----CCWTTGTY---
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.82
Offset:5
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
-----CCTTTGTT---
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.80
Offset:5
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
-----CCWTTGTYYB-
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.78
Offset:4
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
----NCCATTGTTC--
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
AGGVNCCTTTGT----
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.77
Offset:5
Orientation:forward strand
Alignment:NKDGGCCTTTGTTYYY
-----CCATTGTTTT-
 C T G A C A T G C A G T C A T G A T C G A G T C A G T C G A C T A G C T A G C T A C T G G A C T A C G T A G C T A G T C A G C T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T