Information for 3-RCHCAGCAGGRGG (Motif 2)

T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
Reverse Opposite:
A T G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C G A C T A C T G C A G T A T C G A G T C
p-value:1e-49
log p-value:-1.146e+02
Information Content per bp:1.638
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif13.30%
Number of Background Sequences with motif1001.9
Percentage of Background Sequences with motif2.11%
Average Position of motif in Targets51.8 +/- 23.3bp
Average Position of motif in Background49.7 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.97
Offset:1
Orientation:forward strand
Alignment:RCHCAGCAGGRGG
-CACAGCAGGGGG
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RCHCAGCAGGRGG--
DCHCAGCAGGRGGCC
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:RCHCAGCAGGRGG
DCTCAGCAGG---
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--RCHCAGCAGGRGG
CCACACAGCAGGAGA
 A C G T A C G T T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--RCHCAGCAGGRGG
CCACACAGCAGGAGA
 A C G T A C G T T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--RCHCAGCAGGRGG
GAGCACAGCAGGACA
 A C G T A C G T T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:RCHCAGCAGGRGG--
-CACAGCGGGGGGTC
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G A C G T A C G T
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:RCHCAGCAGGRGG--
NCGCAGCGGGGGGTC
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:RCHCAGCAGGRGG--
NCNCAGCGGGGGGTC
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.73
Offset:0
Orientation:forward strand
Alignment:RCHCAGCAGGRGG
NAACAGCTGG---
 T C A G T A G C G T C A A G T C C T G A A T C G A G T C C T G A A C T G A T C G C T A G C T A G T A C G
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T