Information for 11-GAGTGCTGTT (Motif 17)

A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
Reverse Opposite:
G C T A G T C A A T G C C G T A T A C G A G T C G C T A A G T C A C G T T G A C
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.832
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif138.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets60.9 +/- 21.1bp
Average Position of motif in Background46.0 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCTGTT
TTRAGTGSYK--
 A C G T A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTGTT
TTGAGTGSTT--
 A C G T A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTGTT
TTAAGTGCTT--
 A C G T A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCTGTT
CTYRAGTGSY---
 A C G T A C G T A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCTGTT
BTBRAGTGSN---
 A C G T A C G T A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCTGTT
CTTGAGTGGCT--
 A C G T A C G T A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GAGTGCTGTT
----GCTGTG
 A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Rhox11/MA0629.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGTGCTGTT------
AAGACGCTGTAAAGCGA
 A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGTGCTGTT------
AAGACGCTGTAAAGCGA
 A C G T A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

MSC/MA0665.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GAGTGCTGTT
AACAGCTGTT
 A C T G G T C A A C T G C G A T A C T G A G T C C G A T A T C G A C G T C G A T
C T G A T G C A A T G C C G T A A T C G A T G C A C G T A C T G A G C T A G C T