Information for 1-CWTTGTCATGCAAATK (Motif 1)

A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T
Reverse Opposite:
G T C A G C T A A C G T G A C T G C A T T C A G G T A C G T C A G C A T C A T G G C T A T A G C C G T A C T G A C G A T T C A G
p-value:1e-92
log p-value:-2.131e+02
Information Content per bp:1.585
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif12.30%
Number of Background Sequences with motif281.7
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets49.7 +/- 22.7bp
Average Position of motif in Background54.1 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK
CTTTGTTATGCAAAT-
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CWTTGTCATGCAAATK
CATTGTTATGCAAAT-
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.72
Offset:6
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK--
------TATGCWAATBAV
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:CWTTGTCATGCAAATK
-----TTATGCAAAT-
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:CWTTGTCATGCAAATK--
-----ATATGCAAATNNN
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU3F1/MA0786.1/Jaspar

Match Rank:6
Score:0.71
Offset:5
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK-
-----TTATGCAAATTA
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK---
---TTGTATGCAAATTAGA
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.70
Offset:3
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK---
---TTGTATGCAAATTAGA
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.70
Offset:6
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK--
------WATGCAAATGAG
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.70
Offset:6
Orientation:forward strand
Alignment:CWTTGTCATGCAAATK
------TATGCAAAT-
 A G T C C G T A G A C T C G A T A T C G C G A T G T A C C G T A A C G T A C T G A G T C C G T A C T G A T G C A C G A T C A G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T