Information for 6-SWGTTGAWTG (Motif 5)

A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G
Reverse Opposite:
A G T C G T C A G C A T G C A T A G T C G T C A C T G A T G A C C G A T T A G C
p-value:1e-16
log p-value:-3.808e+01
Information Content per bp:1.653
Number of Target Sequences with motif117.0
Percentage of Target Sequences with motif15.77%
Number of Background Sequences with motif1549.2
Percentage of Background Sequences with motif6.78%
Average Position of motif in Targets54.2 +/- 26.0bp
Average Position of motif in Background50.5 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.83
Offset:3
Orientation:reverse strand
Alignment:SWGTTGAWTG-
---TTGATTGN
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T
A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

PH0026.1_Duxbl/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--SWGTTGAWTG-----
NNNNGTTGATTGGGTCG
 A C G T A C G T A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A T G C C G T A A G T C A G T C T C A G G A C T C G A T C T A G C T G A A C G T A C G T C T A G T C A G T C A G G A C T G A T C T C A G

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:SWGTTGAWTG----
--TTTGATTGATGN
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T A C G T A C G T
A C G T A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---SWGTTGAWTG-----
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T A C G T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:SWGTTGAWTG---
--CTTGAGTGGCT
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T A C G T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:SWGTTGAWTG--
--GTTAATGGCC
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:SWGTTGAWTG-----
---BTGABTGACAGS
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:SWGTTGAWTG------
ACTATGAATGAATGAT
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-SWGTTGAWTG-
NNTGTGGATTSS
 A C G T A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:SWGTTGAWTG--
--GNTAATTGGN
 A T C G G C T A A C T G G A C T A C G T T C A G C G T A C G T A A C G T C T A G A C G T A C G T
A C G T A C G T T A C G A T G C A G C T T C G A C G T A A C G T A C G T T C A G T A C G A T C G