Information for 2-GCHCAGCAGGAGRCHN (Motif 3)

A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
Reverse Opposite:
G A C T C A T G T C A G G A T C G A T C G A C T A T G C G A T C G C A T C T A G A G T C G C A T C A T G C A G T A C T G T G A C
p-value:1e-49
log p-value:-1.143e+02
Information Content per bp:1.527
Number of Target Sequences with motif109.0
Percentage of Target Sequences with motif14.69%
Number of Background Sequences with motif554.6
Percentage of Background Sequences with motif2.43%
Average Position of motif in Targets49.1 +/- 25.5bp
Average Position of motif in Background49.0 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:GCHCAGCAGGAGRCHN
DCHCAGCAGGRGGCC-
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:forward strand
Alignment:GCHCAGCAGGAGRCHN
-CACAGCAGGGGG---
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GCHCAGCAGGAGRCHN
CCACACAGCAGGAGA---
 A C G T A C G T A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GCHCAGCAGGAGRCHN
CCACACAGCAGGAGA---
 A C G T A C G T A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GCHCAGCAGGAGRCHN
GAGCACAGCAGGACA---
 A C G T A C G T A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GCHCAGCAGGAGRCHN
DCTCAGCAGG------
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GCHCAGCAGGAGRCHN
-CACAGCGGGGGGTC-
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GCHCAGCAGGAGRCHN
NCNCAGCGGGGGGTC-
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:GCHCAGCAGGAGRCHN
NCGCAGCGGGGGGTC-
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GCHCAGCAGGAGRCHN
NAACAGCTGG------
 A C T G T G A C G T C A G A T C C G T A T C A G A G T C C G T A C T A G T A C G C T G A C T A G C T A G A G T C G T A C C T G A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T