Information for 18-GAGGCATCAA (Motif 24)

T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A
Reverse Opposite:
G A C T A C G T A T C G C G T A C G A T A C T G A G T C A G T C C A G T A T G C
p-value:1e-7
log p-value:-1.716e+01
Information Content per bp:1.836
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif53.7
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets53.0 +/- 23.8bp
Average Position of motif in Background51.8 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGGCATCAA------
TCACCCATCAATAAACA
 A C G T T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PH0166.1_Six6_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GAGGCATCAA----
AATAGGGTATCAATATT
 A C G T A C G T A C G T T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

PH0161.1_Six1/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAGGCATCAA----
GATGGGGTATCATTTTT
 A C G T A C G T A C G T T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

PB0059.1_Six6_1/Jaspar

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GAGGCATCAA----
AATAGGGTATCATATAT
 A C G T A C G T A C G T T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GAGGCATCAA----
AATAGGGTATCAATTAT
 A C G T A C G T A C G T T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

PH0162.1_Six2/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GAGGCATCAA----
AATGGGGTATCACGTTT
 A C G T A C G T A C G T T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGCATCAA-
-GGCCATTAAC
 T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGCATCAA-------
-GAAGATCAATCACTAA
 T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGCATCAA-------
-GAAGATCAATCACTTA
 T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAGGCATCAA-
-----ATTAAA
 T A C G G C T A C T A G C T A G G T A C C G T A C G A T A T G C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A