Information for 20-CTCTCCATTCATT (Motif 18)

A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T
Reverse Opposite:
C G T A G T C A A C G T A C T G C G T A C G T A C G A T C T A G T C A G C T G A C T A G C G T A A C T G
p-value:1e-10
log p-value:-2.306e+01
Information Content per bp:1.893
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.3 +/- 22.6bp
Average Position of motif in Background21.0 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTCTCCATTCATT-----
----ACATTCATGACACG
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCTCCATTCATT----
GACCACATTCATACAAT
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T A C G T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTCTCCATTCATT------
---NNCATTCATTCATNNN
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTCTCCATTCATT----
-AATCAATTCAATAATT
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T A C G T
A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCTCCATTCATT
ATTTTCCATT----
 A C G T A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T
C G T A A C G T A C G T A C G T A C G T A G T C A G T C C T G A A G C T A G C T A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CTCTCCATTCATT
ATTTTCCATT----
 A C G T A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T
C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T A C G T A C G T A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:7
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CTCTCCATTCATT---
------ATTGATTYND
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T A T C G G T C A A G C T G A C T A G C T T G A C C G A T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTCTCCATTCATT
GTTTCACTTCCG-
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T
A T C G G A C T A C G T A G C T A G T C G C T A A G T C G C A T A C G T A G T C G A T C A C T G A C G T

Hoxd8/MA0910.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTCTCCATTCATT-----
-NAGCCATTAATTANTTA
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A

PH0080.1_Hoxd8/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTCTCCATTCATT-----
-NAGCCATTAATTANTTA
 A G T C C G A T A G T C A G C T A G T C A G T C C G T A A C G T A C G T A G T C G T C A A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G C T A C T A G G A T C G A T C C T G A C G A T G C A T C G T A C G T A C G A T C A G T C T G A G C A T G A C T C G A T G T C A