Information for 6-GGGGCAGAGGAAGGGC (Motif 13)

C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C
Reverse Opposite:
A C T G A T G C A G T C A G T C A G C T A G C T A T G C G T A C A C G T A T G C A C G T A T C G T G A C A T G C A G T C A G T C
p-value:1e-7
log p-value:-1.797e+01
Information Content per bp:1.800
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif15.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.9 +/- 25.5bp
Average Position of motif in Background53.0 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC--
RGGTCADNNAGAGGTCAV
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC
-----AGAGGAAGTG-
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T C G T A T A C G T C G A A C T G A C T G C G T A C G T A T A C G A G C T T A C G A C G T

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC-
-----TGGGGAAGGGCM
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C T A G C T A G C T A G A C T G T C G A C T G A C T A G C T A G C T A G G T A C G T C A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC-
AGGTCACGGAGAGGTCA
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC
-----AGAGGAA----
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T

SP2/MA0516.1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGGGCAGAGGAAGGGC
-GGGNGGGGGCGGGGC
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C
A C G T T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

RARA(var.2)/MA0730.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC-
AGGTCATGCAAAGGTCA
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC-
AGGTCAACTAAAGGTCA
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

NR2C2/MA0504.1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGGGCAGAGGAAGGGC
AGGGGTCAGAGGTCA---
 A C G T A C G T C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GGGGCAGAGGAAGGGC
-----ACAGGAAGTG-
 C T A G A C T G A T C G A C T G A T G C C G T A A T C G C G T A A C T G A T C G C T G A C T G A A C T G A C T G A T C G G T A C
A C G T A C G T A C G T A C G T A C G T T C G A T A G C T G C A A C T G A C T G C G T A C G T A C T A G G A C T T A C G A C G T