Information for 16-TGCCAGGCAG (Motif 30)

A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G
Reverse Opposite:
G A T C G C A T T A C G A T G C T A G C G C A T T C A G T C A G G A T C T C G A
p-value:1e-7
log p-value:-1.676e+01
Information Content per bp:1.563
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif30.8
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets47.5 +/- 28.1bp
Average Position of motif in Background45.3 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TGCCAGGCAG-
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAGGCAG
AGGTGNCAGACAG
 A C G T A C G T A C G T A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

INSM1/MA0155.1/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGCCAGGCAG--
TGTCAGGGGGCG
 A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G A C G T A C G T
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----TGCCAGGCAG-
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0029.1_Hic1_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGCCAGGCAG--
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C G T A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:TGCCAGGCAG-
-----CACAGN
 A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGCAG
TTGCCAAG---
 A C G T A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TGCCAGGCAG-
-----CGGAGC
 A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGCAG
ATGCCAACC--
 A C G T A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGCCAGGCAG
TGCGTGGGYG
 A G C T C T A G A G T C A G T C C G T A A T C G T A C G A T G C C G T A C T A G
C A G T T C A G G A T C A C T G A C G T C T A G A C T G A C T G G A C T C T A G