Information for 4-CAGACTGTCCTTA (Motif 3)

A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
Reverse Opposite:
A C G T G T C A C G T A A C T G A C T G C T G A A G T C G T C A C T A G A C G T A G T C A C G T A C T G
p-value:1e-14
log p-value:-3.328e+01
Information Content per bp:1.911
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 14.5bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGTCCTTA
GVACAGNMTGTYCTB-
 A C G T A C G T A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGTCCTTA
GRACAGWMTGTYCTB-
 A C G T A C G T A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAGACTGTCCTTA
AGNACAGNCTGTTCTN-
 A C G T A C G T A C G T A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGTCCTTA
GAACADWATGTTCTT-
 A C G T A C G T A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAGACTGTCCTTA
AGNACANNNTGTNCTN-
 A C G T A C G T A C G T A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAGACTGTCCTTA
-----TGACCTYA
 A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGTCCTTA
GGTCANNGTGACCTN-
 A C G T A C G T A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGTCCTTA
CCAGACAG------
 A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGTCCTTA
CCAGACRSVB----
 A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGTCCTTA
BCAGACWA------
 A C G T A G T C C G T A T C A G C G T A A G T C A C G T A C T G A G C T A G T C A G T C G C A T A C G T T G C A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T