Information for 13-TCGGAATTAA (Motif 25)

C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A C G T A A C G T A G C T A G T C A G T C C A T G C G T A
p-value:1e-8
log p-value:-1.897e+01
Information Content per bp:1.892
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.8 +/- 23.9bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TCGGAATTAA-----
TGTAGGGATTAATTGTC
 A C G T A C G T C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:TCGGAATTAA
-NGGGATTA-
 C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TCGGAATTAA
--GGGATTAA
 C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:TCGGAATTAA-
--GGGATTANN
 C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TCGGAATTAA-----
TGAAGGGATTAATCATC
 A C G T A C G T C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TCGGAATTAA-----
TAGAGGGATTAAATTTC
 A C G T A C G T C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--TCGGAATTAA-----
AGAGGGGATTAATTTAT
 A C G T A C G T C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0137.1_Pitx1/Jaspar

Match Rank:8
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TCGGAATTAA----
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:9
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TCGGAATTAA-
-VRGGATTARN
 C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.73
Offset:2
Orientation:forward strand
Alignment:TCGGAATTAA
--RGGATTAR
 C G A T G A T C A C T G A C T G C T G A C G T A A C G T A C G T C G T A C G T A
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G