Information for 1-GAACTGWWTATACAGW (Motif 3)

A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
Reverse Opposite:
G C A T A G T C C G A T A T C G A G C T C G T A A C G T G T C A G C A T C G T A G T A C C G T A A C T G A G C T C G A T A G T C
p-value:1e-13
log p-value:-3.174e+01
Information Content per bp:1.736
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.3 +/- 20.9bp
Average Position of motif in Background64.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAACTGWWTATACAGW
GVACAGNMTGTYCTB-
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAACTGWWTATACAGW
GRACAGWMTGTYCTB-
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAACTGWWTATACAGW
AAGAACATWHTGTTC---
 A C G T A C G T A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GAACTGWWTATACAGW
-----GHATATKCAT-
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
A C G T A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAACTGWWTATACAGW
AGNACANNNTGTNCTN-
 A C G T A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GAACTGWWTATACAGW---
--NSTGTTTRCWCAGBNNN
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A A C G T A C G T A C G T
A C G T A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAACTGWWTATACAGW--
---ATGAATATTCATGAG
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAACTGWWTATACAGW
NAGAACAGNCTGTNCT--
 A C G T A C G T A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAACTGWWTATACAGW
-TATTGTTTATT----
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
A C G T G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GAACTGWWTATACAGW
---NTGTTTAYATWW-
 A C T G C G T A C T G A G T A C A C G T A C T G G C A T C G T A A C G T T C G A A C G T T C G A A T G C C G T A C T A G C G T A
A C G T A C G T A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T