Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 716)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47080)	% of Background Sequences with Motif
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-252	-5.814e+02	0.0000	308.0	43.02%	1539.5	3.27%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-234	-5.396e+02	0.0000	324.0	45.25%	2076.0	4.41%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-211	-4.880e+02	0.0000	280.0	39.11%	1590.9	3.38%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-184	-4.237e+02	0.0000	269.0	37.57%	1809.5	3.84%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-182	-4.210e+02	0.0000	184.0	25.70%	548.1	1.16%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-151	-3.484e+02	0.0000	212.0	29.61%	1268.8	2.69%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-146	-3.363e+02	0.0000	240.0	33.52%	1904.3	4.04%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-143	-3.315e+02	0.0000	257.0	35.89%	2334.8	4.96%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-139	-3.213e+02	0.0000	209.0	29.19%	1398.9	2.97%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-133	-3.066e+02	0.0000	197.0	27.51%	1280.2	2.72%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-122	-2.831e+02	0.0000	193.0	26.96%	1378.3	2.93%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-109	-2.533e+02	0.0000	147.0	20.53%	773.6	1.64%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-89	-2.061e+02	0.0000	273.0	38.13%	4637.8	9.85%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-14	-3.237e+01	0.0000	72.0	10.06%	1680.3	3.57%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-13	-3.093e+01	0.0000	74.0	10.34%	1810.3	3.84%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-13	-3.054e+01	0.0000	57.0	7.96%	1179.1	2.50%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-12	-2.840e+01	0.0000	53.0	7.40%	1098.4	2.33%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-12	-2.768e+01	0.0000	66.0	9.22%	1613.2	3.43%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-11	-2.752e+01	0.0000	90.0	12.57%	2628.3	5.58%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-9	-2.237e+01	0.0000	64.0	8.94%	1746.8	3.71%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-8	-1.974e+01	0.0000	71.0	9.92%	2180.9	4.63%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-7	-1.763e+01	0.0000	35.0	4.89%	773.5	1.64%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-7	-1.643e+01	0.0000	92.0	12.85%	3395.8	7.21%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-6	-1.483e+01	0.0000	59.0	8.24%	1910.3	4.06%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-6	-1.478e+01	0.0000	102.0	14.25%	4041.6	8.58%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-5	-1.358e+01	0.0000	61.0	8.52%	2083.0	4.42%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-5	-1.312e+01	0.0000	183.0	25.56%	8722.0	18.52%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-5	-1.298e+01	0.0000	14.0	1.96%	192.5	0.41%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-5	-1.256e+01	0.0000	112.0	15.64%	4787.1	10.17%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-5	-1.251e+01	0.0000	44.0	6.15%	1360.4	2.89%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-5	-1.227e+01	0.0001	54.0	7.54%	1836.3	3.90%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-4	-1.097e+01	0.0002	93.0	12.99%	3930.8	8.35%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-4	-1.065e+01	0.0003	32.0	4.47%	928.5	1.97%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-4	-1.045e+01	0.0003	35.0	4.89%	1070.1	2.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-9.655e+00	0.0007	35.0	4.89%	1114.1	2.37%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-4	-9.458e+00	0.0008	30.0	4.19%	901.2	1.91%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-4	-9.247e+00	0.0009	18.0	2.51%	415.3	0.88%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e-3	-8.472e+00	0.0020	75.0	10.47%	3229.4	6.86%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-3	-8.086e+00	0.0029	38.0	5.31%	1356.0	2.88%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-3	-8.074e+00	0.0029	22.0	3.07%	623.3	1.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-8.065e+00	0.0029	57.0	7.96%	2316.8	4.92%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-3	-7.930e+00	0.0031	26.0	3.63%	805.5	1.71%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-7.388e+00	0.0052	43.0	6.01%	1658.8	3.52%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-3	-7.307e+00	0.0056	51.0	7.12%	2076.4	4.41%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-7.142e+00	0.0064	77.0	10.75%	3495.2	7.42%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-7.025e+00	0.0070	58.0	8.10%	2474.7	5.26%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-6.952e+00	0.0074	16.0	2.23%	422.8	0.90%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-6.921e+00	0.0075	32.0	4.47%	1149.8	2.44%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-6.874e+00	0.0077	13.0	1.82%	306.7	0.65%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-6.845e+00	0.0077	46.0	6.42%	1860.4	3.95%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-2	-6.829e+00	0.0077	105.0	14.66%	5124.7	10.88%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-6.557e+00	0.0099	31.0	4.33%	1127.6	2.39%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.413e+00	0.0113	32.0	4.47%	1187.5	2.52%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.399e+00	0.0113	178.0	24.86%	9550.5	20.28%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-2	-6.375e+00	0.0113	80.0	11.17%	3765.1	8.00%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-2	-6.299e+00	0.0119	57.0	7.96%	2501.7	5.31%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-2	-6.237e+00	0.0125	19.0	2.65%	584.6	1.24%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-6.180e+00	0.0130	20.0	2.79%	632.1	1.34%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-6.163e+00	0.0130	23.0	3.21%	771.5	1.64%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-2	-6.092e+00	0.0137	7.0	0.98%	116.5	0.25%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-6.090e+00	0.0137	6.0	0.84%	86.7	0.18%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-6.086e+00	0.0137	14.0	1.96%	376.3	0.80%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-2	-5.926e+00	0.0154	36.0	5.03%	1429.8	3.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-5.906e+00	0.0155	47.0	6.56%	2007.1	4.26%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.894e+00	0.0155	46.0	6.42%	1955.7	4.15%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-5.699e+00	0.0185	13.0	1.82%	351.3	0.75%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-2	-5.392e+00	0.0247	18.0	2.51%	586.8	1.25%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.351e+00	0.0254	176.0	24.58%	9665.0	20.52%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-2	-5.212e+00	0.0287	103.0	14.39%	5283.0	11.22%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-5.115e+00	0.0312	51.0	7.12%	2316.8	4.92%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.108e+00	0.0312	27.0	3.77%	1042.7	2.21%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-2	-5.092e+00	0.0312	4.0	0.56%	47.5	0.10%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-2	-4.999e+00	0.0336	22.0	3.07%	802.8	1.70%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-4.833e+00	0.0392	25.0	3.49%	964.6	2.05%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-2	-4.814e+00	0.0394	59.0	8.24%	2803.0	5.95%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-4.772e+00	0.0405	22.0	3.07%	819.2	1.74%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-4.666e+00	0.0445	5.0	0.70%	83.5	0.18%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.603e+00	0.0468	80.0	11.17%	4044.5	8.59%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-4.439e+00	0.0544	181.0	25.28%	10207.0	21.67%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-1	-4.415e+00	0.0550	98.0	13.69%	5142.1	10.92%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-4.395e+00	0.0555	162.0	22.63%	9039.8	19.20%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-4.335e+00	0.0582	16.0	2.23%	558.5	1.19%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-4.268e+00	0.0614	4.0	0.56%	60.0	0.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-4.199e+00	0.0651	258.0	36.03%	15139.3	32.15%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-4.166e+00	0.0664	63.0	8.80%	3132.1	6.65%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.162e+00	0.0664	7.0	0.98%	168.5	0.36%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-4.152e+00	0.0664	17.0	2.37%	619.2	1.31%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.045e+00	0.0724	82.0	11.45%	4266.5	9.06%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-3.987e+00	0.0759	29.0	4.05%	1252.2	2.66%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.785e+00	0.0918	33.0	4.61%	1492.4	3.17%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.755e+00	0.0936	92.0	12.85%	4924.0	10.46%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.740e+00	0.0940	26.0	3.63%	1118.7	2.38%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.696e+00	0.0972	45.0	6.28%	2175.6	4.62%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.682e+00	0.0975	47.0	6.56%	2291.9	4.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-3.542e+00	0.1109	61.0	8.52%	3125.9	6.64%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-3.498e+00	0.1147	16.0	2.23%	619.2	1.31%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.488e+00	0.1147	18.0	2.51%	722.3	1.53%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.477e+00	0.1148	30.0	4.19%	1365.3	2.90%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.469e+00	0.1148	65.0	9.08%	3374.1	7.16%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.392e+00	0.1225	5.0	0.70%	116.6	0.25%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-3.389e+00	0.1225	4.0	0.56%	79.2	0.17%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.383e+00	0.1225	12.0	1.68%	429.6	0.91%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.165e+00	0.1491	13.0	1.82%	494.7	1.05%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.147e+00	0.1504	49.0	6.84%	2495.1	5.30%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-3.099e+00	0.1564	10.0	1.40%	351.8	0.75%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-1	-3.059e+00	0.1612	90.0	12.57%	4966.1	10.55%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.032e+00	0.1640	24.0	3.35%	1089.2	2.31%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.007e+00	0.1666	24.0	3.35%	1092.3	2.32%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-2.978e+00	0.1700	14.0	1.96%	560.8	1.19%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-2.952e+00	0.1729	11.0	1.54%	410.2	0.87%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-2.944e+00	0.1729	3.0	0.42%	55.8	0.12%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.938e+00	0.1729	85.0	11.87%	4692.2	9.96%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-2.938e+00	0.1729	11.0	1.54%	411.5	0.87%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.925e+00	0.1729	24.0	3.35%	1102.4	2.34%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.911e+00	0.1729	5.0	0.70%	133.8	0.28%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.911e+00	0.1729	5.0	0.70%	133.8	0.28%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-1	-2.891e+00	0.1729	68.0	9.50%	3674.9	7.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.861e+00	0.1765	9.0	1.26%	318.0	0.68%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.816e+00	0.1830	11.0	1.54%	420.6	0.89%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.812e+00	0.1830	8.0	1.12%	273.3	0.58%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.803e+00	0.1830	6.0	0.84%	181.3	0.38%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-1	-2.681e+00	0.2043	82.0	11.45%	4575.3	9.72%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.671e+00	0.2048	19.0	2.65%	857.9	1.82%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.648e+00	0.2078	21.0	2.93%	970.4	2.06%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.636e+00	0.2086	19.0	2.65%	861.6	1.83%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-1	-2.580e+00	0.2189	26.0	3.63%	1261.0	2.68%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.558e+00	0.2221	114.0	15.92%	6589.4	13.99%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.458e+00	0.2433	20.0	2.79%	938.2	1.99%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.404e+00	0.2549	29.0	4.05%	1459.4	3.10%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.399e+00	0.2549	28.0	3.91%	1402.9	2.98%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-1	-2.391e+00	0.2549	67.0	9.36%	3734.3	7.93%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-2.384e+00	0.2549	21.0	2.93%	1004.0	2.13%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.382e+00	0.2549	60.0	8.38%	3310.4	7.03%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.350e+00	0.2590	2.0	0.28%	34.7	0.07%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.350e+00	0.2590	3.0	0.42%	71.7	0.15%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-2.334e+00	0.2593	14.0	1.96%	621.3	1.32%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.283e+00	0.2711	23.0	3.21%	1132.9	2.41%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.281e+00	0.2711	39.0	5.45%	2069.9	4.40%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.279e+00	0.2711	6.0	0.84%	209.3	0.44%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.225e+00	0.2810	67.0	9.36%	3778.9	8.02%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.217e+00	0.2811	69.0	9.64%	3903.4	8.29%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.189e+00	0.2872	23.0	3.21%	1146.7	2.44%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.183e+00	0.2872	12.0	1.68%	528.1	1.12%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.143e+00	0.2966	3.0	0.42%	78.0	0.17%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.136e+00	0.2966	72.0	10.06%	4111.2	8.73%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.135e+00	0.2966	53.0	7.40%	2945.1	6.25%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-2.134e+00	0.2966	6.0	0.84%	218.6	0.46%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.130e+00	0.2966	89.0	12.43%	5168.7	10.98%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.071e+00	0.3080	11.0	1.54%	485.3	1.03%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.069e+00	0.3080	13.0	1.82%	595.2	1.26%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.060e+00	0.3080	32.0	4.47%	1696.7	3.60%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.050e+00	0.3083	5.0	0.70%	174.3	0.37%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.035e+00	0.3108	3.0	0.42%	82.8	0.18%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.028e+00	0.3111	48.0	6.70%	2667.8	5.66%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.017e+00	0.3124	4.0	0.56%	128.0	0.27%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.994e+00	0.3177	56.0	7.82%	3165.2	6.72%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.991e+00	0.3177	43.0	6.01%	2372.2	5.04%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.963e+00	0.3235	17.0	2.37%	834.1	1.77%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.958e+00	0.3235	4.0	0.56%	131.3	0.28%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.944e+00	0.3255	27.0	3.77%	1421.2	3.02%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.897e+00	0.3391	12.0	1.68%	559.0	1.19%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.846e+00	0.3548	16.0	2.23%	793.4	1.68%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.842e+00	0.3548	32.0	4.47%	1740.6	3.70%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.842e+00	0.3548	32.0	4.47%	1740.6	3.70%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.828e+00	0.3548	4.0	0.56%	138.9	0.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.818e+00	0.3561	3.0	0.42%	92.0	0.20%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.750e+00	0.3786	50.0	6.98%	2862.2	6.08%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.723e+00	0.3868	5.0	0.70%	195.5	0.42%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.717e+00	0.3870	33.0	4.61%	1828.2	3.88%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.708e+00	0.3882	4.0	0.56%	145.9	0.31%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.689e+00	0.3931	8.0	1.12%	359.4	0.76%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.668e+00	0.3993	86.0	12.01%	5141.8	10.92%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.591e+00	0.4285	8.0	1.12%	369.4	0.78%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.578e+00	0.4317	115.0	16.06%	7020.6	14.91%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.576e+00	0.4317	10.0	1.40%	484.4	1.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.564e+00	0.4328	7.0	0.98%	316.8	0.67%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.535e+00	0.4430	40.0	5.59%	2303.8	4.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.533e+00	0.4430	1.0	0.14%	16.4	0.03%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.517e+00	0.4461	8.0	1.12%	377.0	0.80%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.517e+00	0.4461	20.0	2.79%	1083.7	2.30%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.516e+00	0.4461	3.0	0.42%	106.8	0.23%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.493e+00	0.4496	96.0	13.41%	5846.7	12.42%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.489e+00	0.4496	57.0	7.96%	3378.0	7.17%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.479e+00	0.4507	1.0	0.14%	17.3	0.04%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.438e+00	0.4672	25.0	3.49%	1403.3	2.98%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.434e+00	0.4672	6.0	0.84%	273.7	0.58%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.426e+00	0.4676	9.0	1.26%	445.1	0.95%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.380e+00	0.4870	3.0	0.42%	114.2	0.24%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.372e+00	0.4887	9.0	1.26%	452.6	0.96%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.355e+00	0.4944	10.0	1.40%	513.7	1.09%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.317e+00	0.5109	87.0	12.15%	5349.4	11.36%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.305e+00	0.5139	8.0	1.12%	402.1	0.85%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.295e+00	0.5165	30.0	4.19%	1747.7	3.71%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.292e+00	0.5165	21.0	2.93%	1190.4	2.53%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.280e+00	0.5189	17.0	2.37%	947.9	2.01%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.244e+00	0.5354	25.0	3.49%	1449.9	3.08%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.234e+00	0.5380	16.0	2.23%	895.0	1.90%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.232e+00	0.5380	6.0	0.84%	294.1	0.62%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.177e+00	0.5637	29.0	4.05%	1717.3	3.65%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.162e+00	0.5696	15.0	2.09%	849.0	1.80%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.147e+00	0.5749	5.0	0.70%	245.5	0.52%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.135e+00	0.5761	2.0	0.28%	76.0	0.16%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.135e+00	0.5761	2.0	0.28%	77.0	0.16%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.123e+00	0.5803	87.0	12.15%	5441.8	11.56%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.122e+00	0.5803	8.0	1.12%	427.7	0.91%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.075e+00	0.6028	5.0	0.70%	253.5	0.54%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.035e+00	0.6245	4.0	0.56%	198.9	0.42%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.025e+00	0.6281	41.0	5.73%	2529.0	5.37%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.022e+00	0.6281	14.0	1.96%	815.2	1.73%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.006e+00	0.6309	6.0	0.84%	322.5	0.68%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.006e+00	0.6309	6.0	0.84%	322.8	0.69%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.003e+00	0.6309	83.0	11.59%	5245.0	11.14%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.001e+00	0.6309	13.0	1.82%	757.1	1.61%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-9.914e-01	0.6311	34.0	4.75%	2093.7	4.45%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-9.574e-01	0.6499	41.0	5.73%	2555.2	5.43%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-9.312e-01	0.6641	23.0	3.21%	1409.7	2.99%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.298e-01	0.6641	1.0	0.14%	33.1	0.07%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-9.237e-01	0.6641	71.0	9.92%	4510.3	9.58%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-9.199e-01	0.6641	9.0	1.26%	522.9	1.11%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-9.018e-01	0.6715	6.0	0.84%	337.0	0.72%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.900e-01	0.6764	17.0	2.37%	1037.1	2.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.694e-01	0.6873	19.0	2.65%	1171.9	2.49%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.683e-01	0.6873	4.0	0.56%	217.2	0.46%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-8.459e-01	0.6974	37.0	5.17%	2342.6	4.97%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.368e-01	0.7007	4.0	0.56%	221.4	0.47%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-8.367e-01	0.7007	15.0	2.09%	923.2	1.96%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-8.343e-01	0.7007	16.0	2.23%	988.1	2.10%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.030e-01	0.7152	26.0	3.63%	1645.2	3.49%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-7.913e-01	0.7205	7.0	0.98%	419.4	0.89%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.782e-01	0.7236	2.0	0.28%	102.1	0.22%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.782e-01	0.7236	2.0	0.28%	102.8	0.22%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.767e-01	0.7236	42.0	5.87%	2698.0	5.73%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.405e-01	0.7450	63.0	8.80%	4091.7	8.69%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.398e-01	0.7450	9.0	1.26%	559.6	1.19%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.349e-01	0.7450	13.0	1.82%	822.0	1.75%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.281e-01	0.7450	16.0	2.23%	1020.0	2.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.127e-01	0.7530	6.0	0.84%	369.8	0.79%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.028e-01	0.7573	8.0	1.12%	502.5	1.07%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.828e-01	0.7694	24.0	3.35%	1560.0	3.31%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.804e-01	0.7694	9.0	1.26%	573.4	1.22%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.767e-01	0.7694	6.0	0.84%	376.9	0.80%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-6.502e-01	0.7851	2.0	0.28%	115.7	0.25%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.343e-01	0.7943	4.0	0.56%	251.8	0.53%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.187e-01	0.8036	7.0	0.98%	455.2	0.97%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.060e-01	0.8105	7.0	0.98%	458.3	0.97%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.025e-01	0.8105	8.0	1.12%	527.0	1.12%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.025e-01	0.8105	8.0	1.12%	526.2	1.12%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-5.787e-01	0.8228	25.0	3.49%	1671.8	3.55%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.757e-01	0.8228	8.0	1.12%	533.1	1.13%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-5.694e-01	0.8239	5.0	0.70%	331.2	0.70%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.588e-01	0.8293	10.0	1.40%	673.4	1.43%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-5.523e-01	0.8314	10.0	1.40%	675.5	1.43%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-5.421e-01	0.8366	7.0	0.98%	475.0	1.01%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.341e-01	0.8401	1.0	0.14%	58.4	0.12%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.232e-01	0.8459	9.0	1.26%	616.5	1.31%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.117e-01	0.8524	10.0	1.40%	688.9	1.46%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.035e-01	0.8560	48.0	6.70%	3251.4	6.90%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.987e-01	0.8569	24.0	3.35%	1643.6	3.49%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.953e-01	0.8569	16.0	2.23%	1103.1	2.34%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-4.915e-01	0.8569	169.0	23.60%	11301.2	24.00%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.794e-01	0.8635	10.0	1.40%	699.9	1.49%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.691e-01	0.8691	21.0	2.93%	1455.3	3.09%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-4.643e-01	0.8699	13.0	1.82%	911.0	1.93%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-4.554e-01	0.8744	21.0	2.93%	1462.8	3.11%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-4.501e-01	0.8758	4.0	0.56%	288.4	0.61%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.433e-01	0.8784	153.0	21.37%	10300.4	21.87%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.124e-01	0.9025	10.0	1.40%	724.0	1.54%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.111e-01	0.9025	25.0	3.49%	1760.8	3.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.054e-01	0.9025	14.0	1.96%	1006.6	2.14%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.920e-01	0.9075	1.0	0.14%	74.1	0.16%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.920e-01	0.9075	1.0	0.14%	75.0	0.16%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.886e-01	0.9075	60.0	8.38%	4151.8	8.82%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-3.805e-01	0.9114	17.0	2.37%	1227.9	2.61%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.764e-01	0.9118	15.0	2.09%	1090.1	2.31%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.668e-01	0.9172	20.0	2.79%	1443.2	3.06%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.460e-01	0.9331	79.0	11.03%	5477.7	11.63%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.398e-01	0.9355	2.0	0.28%	164.5	0.35%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.388e-01	0.9355	10.0	1.40%	756.7	1.61%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-3.384e-01	0.9355	1.0	0.14%	82.7	0.18%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.334e-01	0.9355	4.0	0.56%	320.6	0.68%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.237e-01	0.9372	34.0	4.75%	2441.3	5.18%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-3.227e-01	0.9372	2.0	0.28%	168.9	0.36%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.210e-01	0.9372	4.0	0.56%	324.3	0.69%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.103e-01	0.9397	11.0	1.54%	842.6	1.79%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.092e-01	0.9397	14.0	1.96%	1057.5	2.25%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-3.085e-01	0.9397	72.0	10.06%	5049.5	10.72%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.811e-01	0.9575	45.0	6.28%	3239.3	6.88%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.800e-01	0.9575	3.0	0.42%	260.9	0.55%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.782e-01	0.9575	25.0	3.49%	1855.9	3.94%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.624e-01	0.9655	69.0	9.64%	4905.8	10.42%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.460e-01	0.9781	3.0	0.42%	272.6	0.58%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.459e-01	0.9781	11.0	1.54%	880.6	1.87%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.384e-01	0.9788	9.0	1.26%	737.0	1.57%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.251e-01	0.9886	2.0	0.28%	196.4	0.42%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.194e-01	0.9909	2.0	0.28%	198.4	0.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.172e-01	0.9909	51.0	7.12%	3732.9	7.93%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.147e-01	0.9909	1.0	0.14%	108.9	0.23%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.138e-01	0.9909	2.0	0.28%	200.7	0.43%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.136e-01	0.9909	112.0	15.64%	7907.9	16.79%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.009e-01	0.9925	8.0	1.12%	686.7	1.46%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.967e-01	0.9934	30.0	4.19%	2290.0	4.86%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.930e-01	0.9937	2.0	0.28%	208.3	0.44%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.877e-01	0.9958	14.0	1.96%	1146.6	2.43%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.784e-01	1.0000	1.0	0.14%	119.6	0.25%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.755e-01	1.0000	75.0	10.47%	5458.3	11.59%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.712e-01	1.0000	30.0	4.19%	2323.9	4.93%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.614e-01	1.0000	60.0	8.38%	4448.0	9.45%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.562e-01	1.0000	1.0	0.14%	127.8	0.27%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.558e-01	1.0000	10.0	1.40%	875.6	1.86%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.555e-01	1.0000	54.0	7.54%	4041.6	8.58%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.494e-01	1.0000	2.0	0.28%	228.4	0.49%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.438e-01	1.0000	2.0	0.28%	231.4	0.49%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.425e-01	1.0000	10.0	1.40%	888.4	1.89%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.290e-01	1.0000	3.0	0.42%	331.4	0.70%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.262e-01	1.0000	3.0	0.42%	333.9	0.71%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.242e-01	1.0000	1.0	0.14%	141.9	0.30%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.217e-01	1.0000	26.0	3.63%	2110.5	4.48%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.187e-01	1.0000	2.0	0.28%	246.7	0.52%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.141e-01	1.0000	15.0	2.09%	1305.0	2.77%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.134e-01	1.0000	4.0	0.56%	431.8	0.92%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.105e-01	1.0000	14.0	1.96%	1234.6	2.62%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.085e-01	1.0000	2.0	0.28%	253.7	0.54%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.072e-01	1.0000	2.0	0.28%	254.8	0.54%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.034e-01	1.0000	22.0	3.07%	1848.0	3.92%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.584e-02	1.0000	1.0	0.14%	165.0	0.35%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-8.125e-02	1.0000	5.0	0.70%	552.9	1.17%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-8.055e-02	1.0000	1.0	0.14%	168.2	0.36%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-7.789e-02	1.0000	4.0	0.56%	468.2	0.99%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-7.155e-02	1.0000	32.0	4.47%	2662.3	5.65%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.893e-02	1.0000	67.0	9.36%	5190.2	11.02%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.121e-02	1.0000	50.0	6.98%	4008.6	8.51%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.810e-02	1.0000	53.0	7.40%	4237.4	9.00%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.727e-02	1.0000	7.0	0.98%	763.8	1.62%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.333e-02	1.0000	29.0	4.05%	2539.5	5.39%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.731e-02	1.0000	10.0	1.40%	1069.5	2.27%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.967e-02	1.0000	16.0	2.23%	1593.5	3.38%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.704e-02	1.0000	156.0	21.79%	11680.9	24.80%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.103e-02	1.0000	1.0	0.14%	254.3	0.54%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.600e-02	1.0000	2.0	0.28%	400.0	0.85%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.335e-02	1.0000	3.0	0.42%	527.5	1.12%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.291e-02	1.0000	13.0	1.82%	1458.6	3.10%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.171e-02	1.0000	1.0	0.14%	292.8	0.62%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.084e-02	1.0000	1.0	0.14%	297.1	0.63%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.659e-03	1.0000	2.0	0.28%	446.8	0.95%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-2.076e-03	1.0000	2.0	0.28%	551.8	1.17%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.867e-03	1.0000	6.0	0.84%	1017.7	2.16%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.545e-03	1.0000	3.0	0.42%	700.5	1.49%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	81.6	0.17%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	0.000e+00	1.0000	0.0	0.00%	181.1	0.38%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	0.0	0.00%	31.6	0.07%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	29.1	0.06%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	31.5	0.07%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	10.9	0.02%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	96.4	0.20%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	15.5	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	5.9	0.01%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	0.000e+00	1.0000	0.0	0.00%	120.0	0.25%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	8.8	0.02%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	0.000e+00	1.0000	0.0	0.00%	75.8	0.16%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	13.1	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	2.8	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	23.2	0.05%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	43.0	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	12.0	0.03%