Information for 4-AGCYNTTCATCATCSC (Motif 4)

C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
Reverse Opposite:
A C T G T A C G A C T G T G C A A C G T A C T G C G T A A C G T C T A G C T G A C G T A G T C A C T G A C A T G A G T C A C G T
p-value:1e-14
log p-value:-3.310e+01
Information Content per bp:1.763
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 26.9bp
Average Position of motif in Background38.4 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGCYNTTCATCATCSC
RGCCATYAATCA----
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC
-GYCATCMATCAT---
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PH0016.1_Cux1_1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC-
ACCGGTTGATCACCTGA
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC
--TCATCAATCA----
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:5
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:AGCYNTTCATCATCSC--
--------ATCACCCCAT
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCYNTTCATCATCSC
NAGATWNBNATCTNN--
 A C G T C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC
-GCCATAAATCA----
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC
---ATTGCATCAT---
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC
GGCCATAAATCA----
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCYNTTCATCATCSC
GGCCATAAATCAC---
 C G T A A C T G G T A C A G C T A C G T C G A T A G C T G A T C C G T A A C G T G T A C G T C A A C G T A G T C A T G C A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T A C G T A C G T