Information for 15-CTCTTAAGAG (Motif 30)

A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
p-value:1e-6
log p-value:-1.437e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 25.3bp
Average Position of motif in Background82.5 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTCTTAAGAG
RSCACTYRAG--
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAGAG
NSCACTYVAV--
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTCTTAAGAG
ACCACTTAA---
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTCTTAAGAG-
NTTTTACGAGN
 A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCTTAAGAG------
NTNNTTAAGTGGNTNAN
 A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

Nkx2-5/MA0063.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CTCTTAAGAG
---TTAATTG
 A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTCTTAAGAG
AASCACTCAA---
 A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCTTAAGAG
ACCACTTAA---
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAGAG----
ANATTTTACGAGNNNN
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTAAGAG----
NAATTTTACGAGNTNN
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T C G T A C G T A A C T G C G T A A C T G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T