Information for 4-CCCAGCAGGA (Motif 4)

G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A
Reverse Opposite:
C A G T G A T C G A T C G C A T T A C G T A G C G C A T C A T G C T A G C A T G
p-value:1e-24
log p-value:-5.734e+01
Information Content per bp:1.452
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif12.16%
Number of Background Sequences with motif1493.4
Percentage of Background Sequences with motif3.13%
Average Position of motif in Targets47.7 +/- 25.1bp
Average Position of motif in Background49.5 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CCCAGCAGGA--
CACAGCAGGGGG
 G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGGA--
CCACACAGCAGGAGA
 A C G T A C G T A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---CCCAGCAGGA--
GAGCACAGCAGGACA
 A C G T A C G T A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAGGA----
DCHCAGCAGGRGGCC
 A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-CCCAGCAGGA
DCTCAGCAGG-
 A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CCCAGCAGGA-
ATTTCCCAGVAKSCY
 A C G T A C G T A C G T A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCAGCAGGA----
CACAGCGGGGGGTC
 G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A A C G T A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CCCAGCAGGA
TGCCCAGNHW--
 A C G T A C G T G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCAGCAGGA
CACAGN----
 G T A C G A T C G T A C C G T A A T C G A T G C C G T A C T A G C T A G G T C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T