Information for 21-ATAGCAAGTAACA (Motif 29)

C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A
Reverse Opposite:
C G A T C T A G C G A T A C G T T C G A A G T C A G C T A C G T A C T G A G T C A G C T G C T A C G A T
p-value:1e-8
log p-value:-1.893e+01
Information Content per bp:1.798
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.2 +/- 7.1bp
Average Position of motif in Background62.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0093.1_Zfp105_1/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:forward strand
Alignment:ATAGCAAGTAACA----
--AACAAACAACAAGAG
 C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:ATAGCAAGTAACA-----
---AAAAATAACAAACGG
 C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ATAGCAAGTAACA
WAAGTAAAYA---
 C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:ATAGCAAGTAACA
--GGCCATTAAC-
 C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-ATAGCAAGTAACA--
ACCGGCAATTAATAAA
 A C G T C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T A C G T
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A

PH0006.1_Barhl2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATAGCAAGTAACA-
AAAAACCAATTAAGAA
 A C G T A C G T C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T
G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PB0122.1_Foxk1_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ATAGCAAGTAACA---
-CAAACAACAACACCT
 C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0015.1_Foxa2_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATAGCAAGTAACA--
AAAAAGTAAACAAAGAC
 A C G T A C G T C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ATAGCAAGTAACA
AAAGTAAACA---
 C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATAGCAAGTAACA--
CGAAGCACACAAAATA
 A C G T C G T A C G A T C T G A C T A G G T A C G T C A C T G A C T A G A G C T C G T A C G T A A G T C C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A