Information for 25-CTATYSTGGTCACAAT (Motif 28)

A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T
Reverse Opposite:
C G T A G A C T A C G T A C T G A C G T A C T G T C G A A G T C A G T C C G T A A T C G C T A G C T G A A C G T C G T A A C T G
p-value:1e-8
log p-value:-2.013e+01
Information Content per bp:1.756
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 28.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CTATYSTGGTCACAAT
---SCCTAGCAACAG-
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

Sox17/MA0078.1/Jaspar

Match Rank:2
Score:0.56
Offset:10
Orientation:reverse strand
Alignment:CTATYSTGGTCACAAT---
----------GACAATGNN
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:CTATYSTGGTCACAAT--
--------RNAACAATGG
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTATYSTGGTCACAAT-----
----TCACGGAACAATAGGTG
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTATYSTGGTCACAAT
--ATCAAGGTCA----
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.54
Offset:10
Orientation:reverse strand
Alignment:CTATYSTGGTCACAAT
----------AACAAT
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTATYSTGGTCACAAT
--AAYTAGGTCA----
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:CTATYSTGGTCACAAT-----
----NNNNNGAACAATTGANN
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:9
Score:0.53
Offset:9
Orientation:reverse strand
Alignment:CTATYSTGGTCACAAT
---------NAACAAT
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:forward strand
Alignment:CTATYSTGGTCACAAT-----
------CTCACACAATGGCGC
 A G T C G A C T C G T A G A C T G A T C A T C G C G A T C T A G A C T G A G C T G T A C C G T A A G T C G T C A C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C