Information for 20-AMTSTGCAYGATA (Motif 26)

C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T A G T C C T A G A C G T A C T G A G T C C G T A A T G C C G T A C A G T A C G T
p-value:1e-8
log p-value:-2.013e+01
Information Content per bp:1.893
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.6 +/- 23.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AMTSTGCAYGATA---
-ATTTGCATAACAAAG
 C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A A C G T A C G T A C G T
A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

PH0148.1_Pou3f3/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AMTSTGCAYGATA--
AAAATATGCATAATAAA
 A C G T A C G T C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AMTSTGCAYGATA---
-ATTTGCATAACAATG
 C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A A C G T A C G T A C G T
A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AMTSTGCAYGATA
TTCATTTGCATAT--
 A C G T A C G T C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T

GATA5/MA0766.1/Jaspar

Match Rank:5
Score:0.55
Offset:8
Orientation:forward strand
Alignment:AMTSTGCAYGATA---
--------AGATAAGA
 C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AMTSTGCAYGATA
AAATTAGCATAAT-
 A C G T C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AMTSTGCAYGATA
-ATTTGCATAA--
 C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AMTSTGCAYGATA
AATTTGCATANT-
 C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AMTSTGCAYGATA
TNTAATTTGCATACNA
 A C G T A C G T A C G T C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AMTSTGCAYGATA
TNTAATTTGCATACNA
 A C G T A C G T A C G T C G T A G T A C A C G T A T C G A C G T A C T G A G T C C G T A G A T C A C T G C G T A A C G T C G T A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A