Information for 17-YTCTSMCAAAGGR (Motif 22)

A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A C G T A C G T A C G T A C T G A C G T A T C G C G T A A C T G C G T A C T A G
p-value:1e-9
log p-value:-2.253e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.0 +/- 27.2bp
Average Position of motif in Background62.3 +/- 12.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:YTCTSMCAAAGGR
----AACAAAGG-
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:YTCTSMCAAAGGR
----RACAAWGG-
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-YTCTSMCAAAGGR--
AAACAGACAAAGGAAT
 A C G T A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:YTCTSMCAAAGGR
--VRRACAAWGG-
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

SOX10/MA0442.1/Jaspar

Match Rank:5
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:YTCTSMCAAAGGR
-----ACAAAG--
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:YTCTSMCAAAGGR
--AAAACAAAGG-
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:7
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:YTCTSMCAAAGGR----
-----ACAAAGGNBCCT
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:YTCTSMCAAAGGR--
CTCACACAATGGCGC
 A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-YTCTSMCAAAGGR---
AGAAGAACAAAGGACTA
 A C G T A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-YTCTSMCAAAGGR---
ATAAGAACAAAGGACTA
 A C G T A G T C A C G T A G T C C G A T A T G C G T C A A G T C C G T A G T C A C G T A A C T G A C T G C T G A A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A