Information for 15-TTCCTGCTAATTA (Motif 18)

A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C G T C G T A C T A G A G T C C G T A C T A G A C T G G T C A C T G A
p-value:1e-11
log p-value:-2.598e+01
Information Content per bp:1.843
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.4 +/- 17.1bp
Average Position of motif in Background66.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0032.1_Evx2/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:TTCCTGCTAATTA-----
-CACCGCTAATTAGCGGT
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

PH0176.1_Vsx1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TTCCTGCTAATTA------
--CGAGTTAATTAATAATT
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T A C G G T C A C T A G G A C T G A C T G T C A C G T A G A C T A C G T C T G A C T G A G A C T C T G A T G C A G C A T A G C T

PH0131.1_Pax4/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:TTCCTGCTAATTA-----
-NNGNGCTAATTAGNTNA
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A

EMX2/MA0886.1/Jaspar

Match Rank:4
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:TTCCTGCTAATTA--
-----NCTAATTANN
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A G T C A C G T G T C A C G T A A C G T C A G T C T G A T A C G A G T C

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:5
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:TTCCTGCTAATTA
-----NCTAATTA
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A
A C G T A C G T A C G T A C G T A C G T T A C G A G T C A G C T G T C A C G T A A C G T A C G T C T G A

PH0050.1_Hoxa3/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTCCTGCTAATTA--
-TTGAGGTAATTAGT
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T
A C G T C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T

LHX6/MA0658.1/Jaspar

Match Rank:7
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:TTCCTGCTAATTA--
-----NCTAATTAGT
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A G T C G A C T T C G A T C G A A C G T A G C T T C G A T C A G A G C T

PH0074.1_Hoxd1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TTCCTGCTAATTA-----
-NNNAGCTAATTAGCTTA
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

PB0031.1_Hoxa3_1/Jaspar

Match Rank:9
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TTCCTGCTAATTA--
-TGGAGGTAATTAAC
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T A C G T
A C G T C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

VSX2/MA0726.1/Jaspar

Match Rank:10
Score:0.70
Offset:6
Orientation:forward strand
Alignment:TTCCTGCTAATTA-
------CTAATTAG
 A G C T A C G T A G T C A G T C C G A T A C T G A G T C A C G T C G T A C G T A C G A T C G A T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A C T G C T A T G C A G A C T G C A T C T G A A C T G