Information for 9-AGGAGGCGCTGTG (Motif 10)

C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
Reverse Opposite:
G T A C G T C A A G T C C G T A A C T G A G T C A C T G A G T C A T G C A C G T A T G C A G T C A G C T
p-value:1e-9
log p-value:-2.265e+01
Information Content per bp:1.896
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.9 +/- 18.6bp
Average Position of motif in Background38.6 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.61
Offset:7
Orientation:forward strand
Alignment:AGGAGGCGCTGTG
-------GCTGTG
 C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------AGGAGGCGCTGTG-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGGAGGCGCTGTG
AGGVNCCTTTGT-
 C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGGAGGCGCTGTG
----GGCGCGCT-
 C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGGAGGCGCTGTG-
VAGRACAKNCTGTBC
 A C G T C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

POL003.1_GC-box/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGGAGGCGCTGTG
AGGGGGCGGGGCTG--
 A C G T A C G T A C G T C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------AGGAGGCGCTGTG
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.54
Offset:-8
Orientation:reverse strand
Alignment:--------AGGAGGCGCTGTG
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

Rhox11/MA0629.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGAGGCGCTGTG------
--AAGACGCTGTAAAGCGA
 C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGGAGGCGCTGTG------
--AAGACGCTGTAAAGCGA
 C T G A A C T G A T C G C G T A A T C G A C T G A G T C C T A G A G T C A C G T A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A