Information for 7-TCCAGGCGGCAGC (Motif 9)

A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T A C T G A G T C G T A C A C T G A T G C A G T C A C G T A C T G A C T G G T C A
p-value:1e-8
log p-value:-1.958e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets30.6 +/- 29.5bp
Average Position of motif in Background27.4 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TCCAGGCGGCAGC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TCCAGGCGGCAGC
-CCAGACAG----
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Zfx/MA0146.2/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TCCAGGCGGCAGC---
--CAGGCCNNGGCCNN
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCCAGGCGGCAGC----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCCAGGCGGCAGC
-CCAGACRSVB--
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.54
Offset:9
Orientation:forward strand
Alignment:TCCAGGCGGCAGC-
---------CAGCC
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TCCAGGCGGCAGC
GTGCCACGCGACTG-
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T

POL011.1_XCPE1/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:TCCAGGCGGCAGC
---GGGCGGGACC
 A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
A C G T A C G T A C G T A C T G A T C G A C T G A G T C A C T G A C T G C T A G C G T A A T G C G T A C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----TCCAGGCGGCAGC--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--TCCAGGCGGCAGC
ATGCCAGACN-----
 A C G T A C G T A C G T A G T C A G T C C G T A A C T G A T C G A G T C A C T G A C T G A G T C C G T A A C T G A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T