Information for 7-GGAGABCTBTGGCCAG (Motif 7)

A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G A T C G A G T C A G T C C G T A T A C G C G T A A T C G T C G A A C G T A T G C A C G T A G T C A G T C
p-value:1e-11
log p-value:-2.715e+01
Information Content per bp:1.808
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 26.7bp
Average Position of motif in Background33.3 +/- 9.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGAGABCTBTGGCCAG
GGTCANYTGAGGWCA-
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGAGABCTBTGGCCAG-
-----TGATTGGCTANN
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGAGABCTBTGGCCAG
--TCACCTCTGGGCAG
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
A C G T A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GGAGABCTBTGGCCAG
--------TTGGCA--
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:9
Orientation:reverse strand
Alignment:GGAGABCTBTGGCCAG---
---------TGCCCAGNHW
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GGAGABCTBTGGCCAG
-------NTTGGCANN
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----GGAGABCTBTGGCCAG
NNGAGGTTACTNNAGGTCA-
 A C G T A C G T A C G T A C G T A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGAGABCTBTGGCCAG
----CCGATTGGCT--
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGAGABCTBTGGCCAG
-NAGGTCANTGACCT-
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
A C G T T C A G T C G A C T A G C A T G A C G T A T G C T C G A G A C T A G C T T A C G T G C A G T A C G T A C A G C T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GGAGABCTBTGGCCAG
--TGACCTTTGCCCTA
 A C T G A C T G T G C A A T C G G T C A A C G T A T G C C G A T A G T C A C G T A C T G A C T G A T G C A G T C C G T A A T C G
A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A