Information for 19-GTTCYCCTGCTRC (Motif 42)

A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C T G A G T C C G T A T A C G A C T G C T A G C T A G C G T A C G T A A G T C
p-value:1e-6
log p-value:-1.528e+01
Information Content per bp:1.912
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.5 +/- 27.3bp
Average Position of motif in Background22.7 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GTTCYCCTGCTRC----
--TCNCCTGCTGNGNNN
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTTCYCCTGCTRC-
--CCCCCTGCTGTG
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GTTCYCCTGCTRC----
--TNTCCTGCTGTGNNG
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTTCYCCTGCTRC--
GGCCYCCTGCTGDGH
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GTTCYCCTGCTRC----
--NNTCCTGCTGTGNNN
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GTTCYCCTGCTRC
SNGCACCTGCHS-
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:7
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GTTCYCCTGCTRC--
-----CCTGCTGAGH
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTTCYCCTGCTRC
-TTCCTCT-----
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C
A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTTCYCCTGCTRC--
GACCCCCCGCTGCGC
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTTCYCCTGCTRC-
GACCCCCCGCTGTG
 A C T G A C G T A C G T A G T C A G T C G T A C A T G C A C G T A C T G A G T C A C G T C T A G A G T C A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G