Information for 13-CGGCCAGTCC (Motif 40)

A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C A C G T A C T G C T A G A G T C A G T C A C T G
p-value:1e-7
log p-value:-1.649e+01
Information Content per bp:1.959
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.0 +/- 22.7bp
Average Position of motif in Background48.9 +/- 17.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGGCCAGTCC-
SCTGTCAVTCAV
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGCCAGTCC-
NCTGTCAATCAN
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGCCAGTCC
GSCTGTCACTCA
 A C G T A C G T A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGCCAGTCC
ACTAGCCAATCA
 A C G T A C G T A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

POL002.1_INR/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CGGCCAGTCC-
---TCAGTCTT
 A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CGGCCAGTCC
GGGGATTTCC
 A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGCCAGTCC---
-GGCCACRCCCMK
 A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C A C G T A C G T A C G T
A C G T C T A G C T A G T G A C G T A C T G C A A G T C C T A G A G T C A G T C A G T C G T C A C A T G

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGGCCAGTCC-
-GGAAATTCCC
 A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CGGCCAGTCC--
CNGTCACGCCAC
 A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C A C G T A C G T
G T A C C T A G T C A G A G C T T A G C C G T A A T G C T A C G A G T C G T A C G T C A A G T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGGCCAGTCC
AAGGCAAGTGT
 A C G T A G T C A C T G A C T G A G T C A G T C C G T A A C T G A C G T A G T C A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T