Information for 3-RTGYRYRCRCACA (Motif 2)

T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A
Reverse Opposite:
A G C T C T A G A G C T C T A G A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G C T
p-value:1e-15
log p-value:-3.565e+01
Information Content per bp:1.675
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.98%
Number of Background Sequences with motif186.6
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets48.2 +/- 22.2bp
Average Position of motif in Background59.3 +/- 53.6bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-RTGYRYRCRCACA-
YATGCATATRCATRT
 A C G T T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A A C G T
G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RTGYRYRCRCACA----
NTNTATGTGCACATNNN
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RTGYRYRCRCACA----
NNGTATGTGCACATNNN
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

NRF(NRF)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RTGYRYRCRCACA
GCGCATGCGCAC-
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A
A C T G A G T C A C T G A G T C C G T A A C G T A C T G A G T C A C T G A G T C C T G A T A G C A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:RTGYRYRCRCACA----
-NNTTTGCACACGGCCC
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A A C G T A C G T A C G T A C G T
A C G T C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RTGYRYRCRCACA--
ATGAATATTCATGAG
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A A C G T A C G T
G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:RTGYRYRCRCACA
GCGCATGCGCAG-
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T

PB0095.1_Zfp161_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--RTGYRYRCRCACA-
TGGCGCGCGCGCCTGA
 A C G T A C G T T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A A C G T
C A G T C T A G C T A G A T G C T C A G G A T C C T A G A G T C C T A G A G T C C T A G G A T C G A T C G A C T C T A G C G T A

NRF1/MA0506.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RTGYRYRCRCACA
GCGCCTGCGCA--
 T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----RTGYRYRCRCACA
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T T C G A A G C T C T A G A G T C C T G A A G C T C T A G A G T C C T G A A G T C C T G A A G T C C T G A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A