Information for 11-TGTCYWCCASRGCMAS (Motif 13)

A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G
Reverse Opposite:
A T G C A C G T C A T G A C T G A T G C A G C T A T C G A C G T A C T G A C T G C G A T C T A G C A T G G T C A A G T C C T G A
p-value:1e-11
log p-value:-2.538e+01
Information Content per bp:1.833
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 24.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0054.1_Rfx3_1/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGTCYWCCASRGCMAS-------
TGTGACCCTTAGCAACCGATTAA
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.56
Offset:4
Orientation:forward strand
Alignment:TGTCYWCCASRGCMAS---
----TACCATAGCAACGGT
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGTCYWCCASRGCMAS
--GTTGCCATGGCAAC
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G
A C G T A C G T C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TGTCYWCCASRGCMAS-
---TTGCCATGGCAACN
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGTCYWCCASRGCMAS
TGTCTGDCACCT----
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.52
Offset:5
Orientation:forward strand
Alignment:TGTCYWCCASRGCMAS
-----GCCACACCCA-
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGTCYWCCASRGCMAS
---AAACCACAGC---
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TGTCYWCCASRGCMAS-
---TTGCCATGGCAACC
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G A C G T
A C G T A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.51
Offset:6
Orientation:forward strand
Alignment:TGTCYWCCASRGCMAS--
------SCCTAGCAACAG
 A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGTCYWCCASRGCMAS
CTGTCTGTCACCT----
 A C G T A G C T C T A G A C G T G T A C A G T C C G T A A G T C A G T C C G T A A T G C C T G A A T C G A G T C G T A C C G T A A T C G
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T