Information for 9-ACTACAAAAG (Motif 9)

C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
Reverse Opposite:
T G A C A G C T A G C T C A G T A C G T C T A G G A C T G T C A C T A G A G C T
p-value:1e-9
log p-value:-2.238e+01
Information Content per bp:1.702
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.49%
Number of Background Sequences with motif338.0
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets32.7 +/- 26.9bp
Average Position of motif in Background50.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0032.1_IRC900814_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ACTACAAAAG--
ATTTACGACAAATAGC
 A C G T A C G T A C G T A C G T C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G A C G T A C G T
C G T A C G A T G A C T A G C T G C T A A G T C A C T G C T G A T G A C C T G A C G T A G C T A G C A T C G T A C T A G A G T C

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:forward strand
Alignment:ACTACAAAAG
ACWTCAAAGG
 C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:forward strand
Alignment:ACTACAAAAG
ACATCAAAGG
 C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACTACAAAAG
AAAACAAAGG
 C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

RUNX3/MA0684.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACTACAAAAG
AAACCGCAAA--
 A C G T A C G T C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:ACTACAAAAG
--RACAAWGG
 C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACTACAAAAG
NWAACCACADNN-
 A C G T A C G T A C G T C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ACTACAAAAG------
-GTATAAAAGGCGGGG
 C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

NFIL3/MA0025.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACTACAAAAG
ANGTTACATAA-
 A C G T A C G T C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G
C G T A A G C T T C A G A G C T A C G T C G T A A G T C C T G A C G A T G T C A C G T A A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ACTACAAAAG--
ACATCAAAGGNA
 C T G A A G T C A C G T C T G A A G T C G T C A G T C A C T G A T C G A A C T G A C G T A C G T
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A