Information for 8-SCCAATYGTT (Motif 4)

A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
Reverse Opposite:
G T C A C T G A A G T C C T A G C G T A A C G T A C G T A C T G A C T G A T G C
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.838
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.9 +/- 28.7bp
Average Position of motif in Background40.3 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-SCCAATYGTT
AGCCAATCGG-
 A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----SCCAATYGTT
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-SCCAATYGTT
TGCCAA-----
 A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------SCCAATYGTT
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-SCCAATYGTT------
AATCAATTGTTCCGCTA
 A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

VENTX/MA0724.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:SCCAATYGTT
-CTAATCGNT
 A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
A C G T G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---SCCAATYGTT
CGTGCCAAG----
 A C G T A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--SCCAATYGTT-----
ANNTCTATTGTTCNNNA
 A C G T A C G T A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.67
Offset:2
Orientation:forward strand
Alignment:SCCAATYGTT-
--CCATTGTTC
 A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T A C G T
A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:SCCAATYGTT
-CCAATCAA-
 A T C G A G T C A G T C C G T A C G T A A C G T A G T C C T A G A G C T A C G T
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T