Information for 3-GCATTTCCCC (Motif 3)

A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C
Reverse Opposite:
T A C G C A T G C T A G T C A G T C G A T G C A G C T A A C G T A T C G T A G C
p-value:1e-15
log p-value:-3.469e+01
Information Content per bp:1.598
Number of Target Sequences with motif213.0
Percentage of Target Sequences with motif22.81%
Number of Background Sequences with motif6101.1
Percentage of Background Sequences with motif13.20%
Average Position of motif in Targets54.8 +/- 28.2bp
Average Position of motif in Background50.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GCATTTCCCC
NGGGGATTTCCC-
 A C G T A C G T A C G T A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCATTTCCCC
GGGAATTTCC--
 A C G T A C G T A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GCATTTCCCC
GGGGATTTCC--
 A C G T A C G T A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:4
Score:0.74
Offset:5
Orientation:reverse strand
Alignment:GCATTTCCCC-
-----TCCCCA
 A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A

SPIB/MA0081.1/Jaspar

Match Rank:5
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:GCATTTCCCC-
----TTCCTCT
 A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C A C G T
A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:6
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GCATTTCCCC----
NNACTTCCTCTTNN
 A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C A C G T A C G T A C G T A C G T
C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer

Match Rank:7
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCATTTCCCC---
-CACTTCCYCTTT
 A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C A C G T A C G T A C G T
A C G T T A G C T C G A A T G C A C G T A C G T A G T C A G T C A G C T G A T C G C A T G A C T G C A T

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GCATTTCCCC-
-CACTTCCTCT
 A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C A C G T
A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GCATTTCCCC
GGGAATTTCC--
 A C G T A C G T A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCATTTCCCC
TKCTGTTCCA-
 A C G T A T C G T A G C T G C A C G A T A C G T A G C T A G T C G A T C G T A C A T G C
A C G T C A G T T A G C A G C T T A C G C G A T A C G T A G T C G T A C G T C A A C G T