Information for 9-YCMCYAAATCCAR (Motif 14)

A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T A C T G A C T G C G T A A G C T A C G T A C G T C T A G A C T G A C G T A C T G C T G A
p-value:1e-9
log p-value:-2.176e+01
Information Content per bp:1.879
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets37.7 +/- 16.7bp
Average Position of motif in Background51.6 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0185.1_Tcf1_2/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YCMCYAAATCCAR----
---NNTAATCCNGNCNN
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

PITX3/MA0714.1/Jaspar

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YCMCYAAATCCAR
---CTTAATCCC-
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:YCMCYAAATCCAR---
----SSAATCCACANN
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

FOXH1/MA0479.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:YCMCYAAATCCAR-
---TCCAATCCACA
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G A C G T
A C G T A C G T A C G T A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YCMCYAAATCCAR
---NYTAATCCYB
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:YCMCYAAATCCAR
----TTAATCCC-
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YCMCYAAATCCAR
---GCTAATCC--
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:YCMCYAAATCCAR-
--ACCACATCCTGT
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G A C G T
A C G T A C G T T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.58
Offset:5
Orientation:forward strand
Alignment:YCMCYAAATCCAR
-----TAATCCCN
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:YCMCYAAATCCAR
----ATAATCCC-
 A G C T A G T C G T C A A G T C A G T C C G T A C G T A C T G A A C G T A G T C A G T C C G T A C T A G
A C G T A C G T A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T