Information for 4-TGGACCATGCAGG (Motif 6)

A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G
Reverse Opposite:
G T A C A G T C A C G T C A T G A G T C C T G A A C G T C T A G A C T G G A C T A G T C A T G C C G T A
p-value:1e-13
log p-value:-3.146e+01
Information Content per bp:1.924
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.5 +/- 19.9bp
Average Position of motif in Background42.1 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGGACCATGCAGG
-GGACCACCCACG
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G
A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

GCM1/MA0646.1/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGGACCATGCAGG---
-----CATGCGGGTAC
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGGACCATGCAGG--
-----TATGCGGGTA
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGGACCATGCAGG-----
--NNNNATGCGGGTNNNN
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGACCATGCAGG-----
TGGACCAATCAGCACTCT
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGGACCATGCAGG
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGGACCATGCAGG-
ATGAATWATTCATGA
 A C G T A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGGACCATGCAGG-
ATGCATWATGCATRW
 A C G T A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TGGACCATGCAGG---
----CACAGCAGGGGG
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TGGACCATGCAGG-----
---DCHCAGCAGGRGGCC
 A C G T A T C G A C T G C T G A A G T C A G T C G T C A A G C T A C T G G T A C C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C