Information for 12-GATATGCACG (Motif 41)

A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G
Reverse Opposite:
G T A C A T C G A C G T A C T G A G T C C G T A C G A T C T G A C G A T A G T C
p-value:1e-6
log p-value:-1.535e+01
Information Content per bp:1.877
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif25.2
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets48.0 +/- 25.8bp
Average Position of motif in Background52.0 +/- 40.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GATATGCACG
GHATATKCAT-
 A C G T A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GATATGCACG-----
CAGATGTGCACATACGT
 A C G T A C G T A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GATATGCACG---
-----GCACGTAY
 A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GATATGCACG-
TTCATTTGCATAT
 A C G T A C G T A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GATATGCACG-----
TACATGTGCACATAAAA
 A C G T A C G T A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GATATGCACG---
-----GCACGTNC
 A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GATATGCACG-
-ATATGCAAAT
 A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T
A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GATATGCACG--
----BGCACGTA
 A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GATATGCACG----
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GATATGCACG---
---TBGCACGCAA
 A C T G C G T A A G C T C G T A A C G T A C T G A G T C C G T A A T G C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A