Information for 15-RGGAGMTRCAGRCRSA (Motif 25)

C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
Reverse Opposite:
A C G T A T C G G A T C A C T G A G C T A T G C A C G T A C T G A G T C C G T A A C T G A G T C A C G T A G T C A T G C A G T C
p-value:1e-9
log p-value:-2.186e+01
Information Content per bp:1.844
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.4 +/- 24.1bp
Average Position of motif in Background11.1 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RGGAGMTRCAGRCRSA
AAGGKGRCGCAGGCA--
 A C G T C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:RGGAGMTRCAGRCRSA-
-------CCAGACRSVB
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:RGGAGMTRCAGRCRSA
-------CCAGACAG-
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RGGAGMTRCAGRCRSA
CGGAGC----------
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RGGAGMTRCAGRCRSA--
---AGCAACAGCCGCACC
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A A C G T A C G T
A C G T A C G T A C G T T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

GFY(?)/Promoter/Homer

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RGGAGMTRCAGRCRSA
GGGAATTGTAGT----
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T A C G T A C G T A C G T A C G T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RGGAGMTRCAGRCRSA
AGATGCTRCTRCCHT-
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:8
Score:0.50
Offset:-7
Orientation:reverse strand
Alignment:-------RGGAGMTRCAGRCRSA
GCMTBCTGGGAGTTGTAGTY---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:9
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:RGGAGMTRCAGRCRSA
-------BCAGACWA-
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.50
Offset:6
Orientation:forward strand
Alignment:RGGAGMTRCAGRCRSA
------TGCTGACTCA
 C T A G A T C G A C T G C G T A A C T G G T A C A C G T C T A G A G T C C G T A A T C G C T G A A G T C C T A G A T G C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A