Information for 5-CGCTGGTGCA (Motif 20)

G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A
Reverse Opposite:
G A C T T C A G A G T C C T G A A G T C A G T C C G T A A C T G A T G C A C T G
p-value:1e-9
log p-value:-2.281e+01
Information Content per bp:1.842
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.88%
Number of Background Sequences with motif134.2
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets65.6 +/- 23.5bp
Average Position of motif in Background48.6 +/- 42.2bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CGCTGGTGCA-
SDGCAGGTGCNS
 A C G T G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

TCF4/MA0830.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGCTGGTGCA
NNCAGGTGCG
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

ID4/MA0824.1/Jaspar

Match Rank:3
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGCTGGTGCA
GACAGGTGTN
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

TCF3/MA0522.2/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGCTGGTGCA
NNCAGGTGTN
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CGCTGGTGCA----
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGCTGGTGCA
NNCAGGTGNN
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGCTGGTGCA--
--MTGATGCAAT
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A A C G T A C G T
A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCTGGTGCA
AACAGGTGT-
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGCTGGTGCA--
--ATGATGCAAT
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A A C G T A C G T
A C G T A C G T T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCTGGTGCA-
-NATGTTGCAA
 G T A C T A C G A G T C C G A T A C T G C T A G A G C T A C T G A G T C C T G A A C G T
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A