Information for 1-TGCACAYRTGTGCAYR (Motif 2)

G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A
Reverse Opposite:
G A C T T C A G A G C T C T A G A G T C T C G A G A T C C T G A G A T C C T A G A G C T T C A G A G C T T C A G G A T C C T G A
p-value:1e-22
log p-value:-5.066e+01
Information Content per bp:1.516
Number of Target Sequences with motif100.0
Percentage of Target Sequences with motif16.92%
Number of Background Sequences with motif2079.7
Percentage of Background Sequences with motif5.60%
Average Position of motif in Targets51.1 +/- 25.2bp
Average Position of motif in Background47.9 +/- 53.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:TGCACAYRTGTGCAYR
-AYATGYATATGCATR
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A
A C G T C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TGCACAYRTGTGCAYR----
---NTNTATGTGCACATNNN
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGCACAYRTGTGCAYR----
---NNGTATGTGCACATNNN
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0044.1_Mtf1_1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGCACAYRTGTGCAYR--
--GGGCCGTGTGCAAAAA
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A A C G T A C G T
A C G T A C G T C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:TGCACAYRTGTGCAYR
-----GHATATKCAT-
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A
A C G T A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGCACAYRTGTGCAYR-----
----AAAATATGCATAATAAA
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

POU2F2/MA0507.1/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TGCACAYRTGTGCAYR-
----TTCATTTGCATAT
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A A C G T
A C G T A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:TGCACAYRTGTGCAYR
--AACACGTGTT----
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A
A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T A C G T A C G T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:TGCACAYRTGTGCAYR
--NACATATGGN----
 G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A
A C G T A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TGCACAYRTGTGCAYR
AGCGGCACACACGCAA---
 A C G T A C G T A C G T G A C T C T A G A G T C T C G A A G T C T C G A G A T C C T A G G A C T C T A G A G C T T C A G G A T C T C G A A G T C C T G A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T