Information for 1-TGTGTATGCATGT (Motif 1)

G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T
Reverse Opposite:
T C G A G A T C C T G A G A C T T A C G G A T C T C G A A G C T G C T A G A T C C G T A A T G C C G T A
p-value:1e-26
log p-value:-6.198e+01
Information Content per bp:1.645
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif14.21%
Number of Background Sequences with motif1278.0
Percentage of Background Sequences with motif3.44%
Average Position of motif in Targets49.1 +/- 27.5bp
Average Position of motif in Background51.6 +/- 49.4bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGTGTATGCATGT
-GHATATKCAT--
 G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGTGTATGCATGT
AYATGYATATGCATR-
 A C G T A C G T A C G T G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTGTATGCATGT
TTCATTTGCATAT
 G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGTGTATGCATGT----
NTTNTATGAATGTGNNC
 G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T A C G T A C G T A C G T A C G T
G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTGTATGCATGT
CCATTGTATGCAAAT
 A C G T A C G T G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PH0148.1_Pou3f3/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGTGTATGCATGT---
TNNATTATGCATANNTT
 A C G T G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PH0082.1_Irx2/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGTGTATGCATGT------
--TAAATACATGTAAAATT
 G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TGTGTATGCATGT
CTCATGAATATTCAT--
 A C G T A C G T A C G T A C G T G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T
T A G C G A C T G A T C C G T A A C G T T C A G G T C A C G T A A C G T C G T A C G A T A C G T A G T C C G T A C G A T A C G T A C G T

PH0083.1_Irx3_1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGTGTATGCATGT------
--AAAATACATGTAATACT
 G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C T G A C G A T C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A T G C A C G A T C G T A G A T C C G A T

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TGTGTATGCATGT---
AACATGCCCAGACATGCCCN
 A C G T A C G T A C G T A C G T G C A T A T C G C G A T C T A G C G A T T C G A A C G T C T A G A G T C C G T A A G C T C A T G A G C T A C G T A C G T A C G T
C T A G C T G A A G T C G C T A C G A T A C T G G A C T G A T C G A T C C T G A C T A G C T G A T G A C G C T A C G A T T C A G G A C T G A T C G A T C C A G T