Information for 5-CTCTAAGCAG (Motif 8)

A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G
Reverse Opposite:
T A G C C G A T T C A G T A G C G C A T A C G T C G T A T C A G C G T A T C A G
p-value:1e-10
log p-value:-2.482e+01
Information Content per bp:1.595
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif17.23%
Number of Background Sequences with motif4740.3
Percentage of Background Sequences with motif9.82%
Average Position of motif in Targets49.2 +/- 26.7bp
Average Position of motif in Background49.4 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTCTAAGCAG----
--CACAGCAGGGGG
 A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTCTAAGCAG----
CCACACAGCAGGAGA
 A C G T A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTCTAAGCAG----
CCACACAGCAGGAGA
 A C G T A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCTAAGCAG------
-DCHCAGCAGGRGGCC
 A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCTAAGCAG-
-DCTCAGCAGG
 A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T
A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCTAAGCAG----
GAGCACAGCAGGACA
 A C G T A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CTCTAAGCAG---
--GTCAGCANNTN
 A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CTCTAAGCAG--
----CAGCTGNT
 A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CTCTAAGCAG
----CAGCC-
 A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTCTAAGCAG-
SCTGTCARCACC
 A C G T A G T C C G A T A G T C G C A T T G C A C G T A A T C G A G T C C G T A A T C G A C G T
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C