Information for 1-CCAGGGACAG (Motif 6)

T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
Reverse Opposite:
A G T C C G A T C A T G G A C T T G A C T A G C G A T C G A C T A C T G A C T G
p-value:1e-11
log p-value:-2.635e+01
Information Content per bp:1.649
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif10.24%
Number of Background Sequences with motif2205.5
Percentage of Background Sequences with motif4.57%
Average Position of motif in Targets46.6 +/- 25.7bp
Average Position of motif in Background50.3 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCAGGGACAG
CCAGGAACAG
 T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.67
Offset:-7
Orientation:forward strand
Alignment:-------CCAGGGACAG----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:3
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CCAGGGACAG----
TCAGCACCATGGACAGCTCC
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCAGGGACAG-
-CAAGGHCANV
 T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G A C G T
A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCAGGGACAG
CAAAGGTCAG
 T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAGGGACAG
BTCAAGGTCA-
 A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:7
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------CCAGGGACAG
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAGGGACAG
NTCAAGGTCA-
 A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGGGACAG
TCCCNNGGGACN-
 A C G T A C G T A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CCAGGGACAG
GTCCCCAGGGGA--
 A C G T A C G T A C G T A C G T T G A C T G A C C T G A C T A G A T C G A C T G C T G A G T A C G C T A T C A G
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T