Information for 2-CCACCAGGGGGCG (Motif 4)

G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
Reverse Opposite:
A T G C T C A G A T G C G A T C G A T C A T G C A G T C A C G T A C T G A T C G A G C T A C T G A C T G
p-value:1e-13
log p-value:-3.061e+01
Information Content per bp:1.671
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.54%
Number of Background Sequences with motif499.8
Percentage of Background Sequences with motif1.04%
Average Position of motif in Targets49.8 +/- 25.3bp
Average Position of motif in Background47.9 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGGGGCG------
GCCASCAGGGGGCGCYVNNG
 A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGGGGCG---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGGGGCG----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

PB0103.1_Zic3_1/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGGGGCG
NCCCCCCCGGGGGGN
 A C G T A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
T C G A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G T A C G A C T G C A T G C A T G C A T G T A C G

PB0101.1_Zic1_1/Jaspar

Match Rank:5
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGGGGCG
CCCCCCCGGGGGNN
 A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

PB0102.1_Zic2_1/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGGGGCG
ACCCCCCCGGGGGGN
 A C G T A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
T G C A T A G C G T A C G T A C G T A C G T A C A T G C T G A C A T C G A T C G A C T G C A T G C A T G C A T G T A C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGGGGCG
DCHCAGCAGGRGGCC
 A C G T A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGGGGCG
CACAGCAGGGGG--
 A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGGGGCG
NCNCAGCGGGGGGTC
 A C G T A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGGGGCG
CACAGCGGGGGGTC
 A C G T G T A C G T A C T C G A A T G C A G T C T G C A A C T G T A C G C T A G C T A G A T C G A G T C T A C G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C