Information for 12-GGAGATKCMYBAG (Motif 20)

A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G
Reverse Opposite:
G A T C C G A T T G A C C T A G C A T G A T C G G T C A G T C A A G C T A G T C A C G T A T G C T G A C
p-value:1e-7
log p-value:-1.690e+01
Information Content per bp:1.667
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif352.7
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets51.0 +/- 22.1bp
Average Position of motif in Background51.8 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GGAGATKCMYBAG--
TGACANARRCCAGRC
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGAGATKCMYBAG
GGAAATTCCC---
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGAGATKCMYBAG
SDGCAGGTGCNS---
 A C G T A C G T A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GGAGATKCMYBAG--
-----TTCCKNAGAA
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A

NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GGAGATKCMYBAG--
---GATGACTCAGCA
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G A C G T A C G T
A C G T A C G T A C G T T A C G T C G A C A G T A C T G G C T A A T G C C G A T G T A C C G T A A C T G T A G C C G T A

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:GGAGATKCMYBAG-----
-GANGTTAACTAGTTTNN
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GGAGATKCMYBAG---
GGGTGTGCCCAAAAGG
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GGAGATKCMYBAG
AACAGGTGT-----
 A C G T A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----GGAGATKCMYBAG
AAGGCCAGATGGTCCGG
 A C G T A C G T A C G T A C G T A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G
G C T A T C G A C T A G C A T G T A G C G T A C C T G A A C T G T C G A C G A T A C T G C A T G A G C T G A T C A T G C A T C G T C A G

RELA/MA0107.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GGAGATKCMYBAG
GGAAATTCCC---
 A C T G A T C G G T C A T C A G C T G A A C G T A C G T A T G C G T A C A G T C A C T G C G T A C T A G
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T