Information for 3-CGCCGGTGCT (Motif 8)

T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
Reverse Opposite:
C G T A A T C G T A G C G C T A A T G C G A T C T C A G T A C G G T A C A T C G
p-value:1e-10
log p-value:-2.443e+01
Information Content per bp:1.658
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif5.62%
Number of Background Sequences with motif862.6
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets54.7 +/- 26.8bp
Average Position of motif in Background49.2 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGGTGCT-
SDGCAGGTGCNS
 A C G T T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T A C G T
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

TCF3/MA0522.2/Jaspar

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CGCCGGTGCT
NNCAGGTGTN
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T

TCF4/MA0830.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGCCGGTGCT
NNCAGGTGCG
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
G C T A T A C G G A T C C G T A A T C G T A C G A C G T C T A G A G T C C T A G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CGCCGGTGCT----
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCCGGTGCT
NNCAGGTGNN
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

ID4/MA0824.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCCGGTGCT
GACAGGTGTN
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A

SNAI2/MA0745.1/Jaspar

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGCCGGTGCT
AACAGGTGT-
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CGCCGGTGCT
---CGGAGC-
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGCCGGTGCT
CGCAGCTGCG
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CGCCGGTGCT------
-NCCGTTGCTANGNGN
 T A G C C A T G A T G C A G T C C T A G T A C G C G A T A T C G T A G C G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G