Information for 3-GCCACVGGCATCA (Motif 5)

A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G T G C A A C G T A C T G G T A C G T A C A T C G T A C G A C G T A C T G A C T G A G T C
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.830
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.59%
Number of Background Sequences with motif50.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets57.0 +/- 20.4bp
Average Position of motif in Background52.5 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCACVGGCATCA
AGCCTCAGGCA---
 A C G T A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCCACVGGCATCA
ANTGCCTGAGGCAAN-
 A C G T A C G T A C G T A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
C G T A C A G T G A C T C A T G G A T C G A T C C A G T T A C G T G C A C A T G C A T G A G T C C G T A G T C A G A C T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCACVGGCATCA
CGCCTCAGGCA---
 A C G T A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCCACVGGCATCA
AGCCTCAGGCA---
 A C G T A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GCCACVGGCATCA
NTNGCCTCAGGCNNN-
 A C G T A C G T A C G T A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T A C G T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCACVGGCATCA--
TGCCAAAATAAACANN
 A C G T A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GCCACVGGCATCA
GCCACACCCA---
 A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GCCACVGGCATCA----
------GTCAGCANNTN
 A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

MAFK/MA0496.1/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCACVGGCATCA----
--CTGAGTCAGCAATTT
 A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T

Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCCACVGGCATCA
GCCACRCCCACY-
 A C T G G T A C A G T C C G T A A T G C T A G C A C T G A C T G A G T C G T C A A C G T A G T C C G T A
T C A G T G A C G T A C T G C A G T A C C T A G G T A C A T G C A G T C G T C A A G T C G A C T A C G T