Information for 5-GCCGTGCAGG (Motif 11)

A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G
Reverse Opposite:
A G T C A G T C C G A T A C T G A G T C C G T A A G T C A C T G A C T G G T A C
p-value:1e-9
log p-value:-2.261e+01
Information Content per bp:1.843
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.04%
Number of Background Sequences with motif578.3
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets48.1 +/- 28.0bp
Average Position of motif in Background50.4 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0199.1_Zfp161_2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCCGTGCAGG----
GCCGCGCAGTGCGT
 A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G A C G T A C G T A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GCCGTGCAGG
GGACGTGC---
 A C G T A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCGTGCAGG
RTACGTGC---
 A C G T A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCGTGCAGG
TACGTGCV--
 A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCCGTGCAGG
GGGTACGTGC---
 A C G T A C G T A C G T A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCCGTGCAGG-----
---SDGCAGGTGCNS
 A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCGTGCAGG-----
DCHCAGCAGGRGGCC
 A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

GCM1/MA0646.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCCGTGCAGG---
--CATGCGGGTAC
 A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G A C G T A C G T A C G T
A C G T A C G T A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTGCAGG------
NNNANTGCAGTGCNNTT
 A C G T A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCCGTGCAGG--
TGCCCTGAGGGCA
 A C G T A C T G G T A C A G T C T C A G G C A T A C T G G T A C G C T A A C T G C T A G A C G T A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A