Information for 7-ACRAWKGGMKKCT (Motif 4)

C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
Reverse Opposite:
C G T A A C T G G T A C G T A C A C G T A T G C A G T C G T A C C G T A A C G T A G C T A C T G C G A T
p-value:1e-15
log p-value:-3.456e+01
Information Content per bp:1.818
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif8.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets39.2 +/- 19.2bp
Average Position of motif in Background53.9 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-ACRAWKGGMKKCT
AACAAAGG------
 A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ACRAWKGGMKKCT
GAACAATGGN-----
 A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACRAWKGGMKKCT
RACAAWGG------
 A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---ACRAWKGGMKKCT
RNAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ACRAWKGGMKKCT
VRAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----ACRAWKGGMKKCT
NNTNNACAATGGGANNN-
 A C G T A C G T A C G T A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---ACRAWKGGMKKCT
VRRACAAWGG------
 A C G T A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ACRAWKGGMKKCT
RAACAATGGN-----
 A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--ACRAWKGGMKKCT
GAACAATGG------
 A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACRAWKGGMKKCT
AAAACAATGG------
 A C G T A C G T A C G T C G T A A G T C C T G A C G T A C G A T A C T G A C T G A T C G G T C A A C G T A C T G A G T C A C G T
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T A C G T A C G T