Information for 7-TTTTATGGCTGAG (Motif 9)

A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
Reverse Opposite:
A G T C A G C T A T G C G T C A A T C G A T G C G T A C C G T A A G C T T G C A T C G A T G C A T C G A
p-value:1e-9
log p-value:-2.247e+01
Information Content per bp:1.551
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif21.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets40.2 +/- 28.8bp
Average Position of motif in Background53.8 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX2/MA0465.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCTGAG
TTTTATGGCTN--
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATGGCTGAG
ANTAATTTTATGGCCGN-
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATGGCTGAG
NGANTTTTATGGCTCN-
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGCTGAG
NTTTTATGAC----
 A C G T A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:TTTTATGGCTGAG
------NGCTN--
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTTTATGGCTGAG
----TWGTCTGV-
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCTGAG
TTTTATTGC----
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCTGAG
TTTAATTGCN---
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T

MAFK/MA0496.1/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTTTATGGCTGAG----
--AAANTGCTGACTNAG
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A C G T A G C A T C G A T A T C G G T A C A C G T A C T G C T G A A T G C G C A T G A T C C G T A C A T G

YY2/MA0748.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTTTATGGCTGAG
--TAATGGCGGNC
 A G C T A C G T A G C T A C G T T C G A C G A T C A T G T A C G T A G C C A G T A T C G T C G A T C A G
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C