Information for 2-CCGAGACAAA (Motif 8)

A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A
Reverse Opposite:
A C G T C G A T A C G T T C A G A C G T A G T C G C A T A T G C A C T G A T C G
p-value:1e-10
log p-value:-2.397e+01
Information Content per bp:1.848
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif23.2
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets55.7 +/- 23.9bp
Average Position of motif in Background50.6 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CCGAGACAAA-----
AAACAGACAAAGGAAT
 A C G T A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

Sox3/MA0514.1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CCGAGACAAA--
--AAAACAAAGG
 A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCGAGACAAA----
ACCGTGACTAATTNN
 A C G T A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PB0140.1_Irf6_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCGAGACAAA-
NNNACCGAGAGTNNN
 A C G T A C G T A C G T A C G T A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCGAGACAAA-
GNNACCGAGAATNNN
 A C G T A C G T A C G T A C G T A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CCGAGACAAA
-CCAGACAG-
 A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCGAGACAAA--
--GGAACAAAGR
 A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCGAGACAAA---
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCGAGACAAA--
--VRRACAAWGG
 A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CCGAGACAAA--
--AAAACAATGG
 A T G C G T A C A T C G C G T A A C T G C G T A A G T C G T C A C G T A C G T A A C G T A C G T
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G